The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0172
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 117554
End posion on genome 117457
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agggtaaaac
tRNA gene sequence 
AGCGGCGTAGGCCAGCCTGGTAGGCCGCAGGGCTCATAACCCTGAGGTCCCTGGTTCAAG
TCCAGGCGCCGCTActt
Downstream region at tRNA end position 
cccctacctc
Secondary structure (Cloverleaf model)
>At0172	Met	CAT
                   c      Actt cccctacctc
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     G G A C C     A
      C G A        A      | | | | |     A
    C       C C G G       C C T G G     C
    T       | | | |                 T T
    G       G G C C
      G T A        G     AGGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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