The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0201
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1661495
End posion on genome 1661585
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaacggccga
tRNA gene sequence 
AGCGGGGTAGGCCAGCCTGGTAGGCCGCGGGGCTCATAACCCCGAGGTCCCCGGTTCAAA
TCCGGGCCCCGCTAcct
Downstream region at tRNA end position 
tgacataagt
Secondary structure (Cloverleaf model)
>At0201	Met	CAT
                   a      Acct tgacataagt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G G C C     A
      C G A        A      | | | | |     A
    C       C C G G       C C C G G     C
    T       | | | |                 T T
    G       G G C C
      G T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A *
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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