The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0546
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 280608
End posion on genome 280511
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gggattgagt
tRNA gene sequence 
AGCGGCGTAGGGCAGCCTGGTAGCCCGCGGGGCTCATAACCCCGAGGTCCCTGGTTCAAG
TCCAGGCGCCGCTAtcc
Downstream region at tRNA end position 
cgcccccatt
Secondary structure (Cloverleaf model)
>At0546	Met	CAT
                   t      Atcc cgcccccatt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     G G A C C     A
      C G A        A      | | | | |     A
    C       C G G G       C C T G G     C
    T       | | | |                 T T
    G       G C C C
      G T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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