The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0821
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 430222
End posion on genome 430148
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atggattgat
tRNA gene sequence 
AGCGGGATGGGATAGCCAGGAGATTCCGCCGGGCTCATAACCCGGAGATCGGTAGTTCAA
ATCTACCTCCCGCTActc
Downstream region at tRNA end position 
ctctggaact
Secondary structure (Cloverleaf model)
>At0821	Met	CAT
                   t      Actc ctctggaact
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C C A T C     A
    C C G A        G      | | | | |     A
  A         T A G G       G G T A G     C
  G           | | |                 T T
  G         T T C C
    A G A          G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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