The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1341
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 880010
End posion on genome 880084
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atcccacaga
tRNA gene sequence 
AGCGGGGTGGGGTAGCCAGGAAATCCCGACGGGCTCATAACCCGTAGATCAGTAGTTCAA
ATCTACTCCCCGCTAtta
Downstream region at tRNA end position 
ctcattgtgc
Secondary structure (Cloverleaf model)
>At1341	Met	CAT
                   a      Atta ctcattgtgc
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T C A T C     A
    C C G A        G      | | | | |     A
  A         T G G G       A G T A G     C
  G           | | |                 T T
  G         T C C C
    A A A          G     AGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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