The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1635
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2765339
End posion on genome 2765265
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atccactttt
tRNA gene sequence 
AGCGAGGTGGGGTAGTCAGGATATCCCGACGGGCTCATAACCCGTAGACCGATGGTTCAA
ATCCATCCCTCGCTAtac
Downstream region at tRNA end position 
ttcttttcag
Secondary structure (Cloverleaf model)
>At1635	Met	CAT
                   t      Atac ttcttttcag
                     A - T
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T A C C     A
    C T G A        G      | | | | |     A
  A         T G G G       G A T G G     C
  G           | | |                 T T
  G         T C C C
    A T A          G     AGACC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK