The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1713
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 692545
End posion on genome 692471
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
acgaagaggt
tRNA gene sequence 
AGCGGGATGGGATAGCCAGGAGATTCCGCCGGGCTCATAACCCGGAGACCGGACGTTCAA
ATCGTCCTCCCGCTActt
Downstream region at tRNA end position 
tcctttcgga
Secondary structure (Cloverleaf model)
>At1713	Met	CAT
                   t      Actt tcctttcgga
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C C T G C     A
    C C G A        G      | | | | |     A
  A         T A G G       G G A C G     C
  G           | | |                 T T
  G         T T C C
    A G A          G     AGACC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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