The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1752
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 283497
End posion on genome 283423
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ccatatatac
tRNA gene sequence 
AGCGGGGTGGGGTAGTCAGGACATCCCGACGGGCTCATAACCCGTAGATCAATGGTTCAA
ATCCATTCCCCGCTActt
Downstream region at tRNA end position 
gcagtacatt
Secondary structure (Cloverleaf model)
>At1752	Met	CAT
                   c      Actt gcagtacatt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T A C C     A
    C T G A        G      | | | | |     A
  A         T G G G       A A T G G     C
  G           | | |                 T T
  G         T C C C
    A C A          G     AGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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