The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1804
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 1640404
End posion on genome 1640481
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
tgggtcgagc
tRNA gene sequence
AGCGGGGTGGGGCAGCTAGGAGTGCCCGCCGGGCTCATAACCCGGAGGTCCGAGGTTCAA
ATCCTCGCCCCGCTACCA
Downstream region at tRNA end position
gtatactttt
Secondary structure (Cloverleaf model)
>At1804	Met	CAT
                   c      ACCA gtatactttt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C T C C     A
    T C G A        G      | | | | |     A
  A         C G G G       C G A G G     C
  G         | | | |                 T T
  G         G C C C
    A G T          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(initiator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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