The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1846
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 297339
End posion on genome 297262
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgggtcgtgc
tRNA gene sequence 
AGCGGGGTGGGGCAGCTAGGAGTGCCCGCCGGGCTCATAACCCGGAGGTCCGAGGTTCAA
ATCCTCGGCCCGCTACCA
Downstream region at tRNA end position 
ttctactttt
Secondary structure (Cloverleaf model)
>At1846	Met	CAT
                   c      ACCA ttctactttt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G   G          T A
                    T     G C T C C     A
    T C G A        G      | | | | |     A
  A         C G G G       C G A G G     C
  G         | | | |                 T T
  G         G C C C
    A G T          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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