The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1992
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 423492
End posion on genome 423418
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
gctggattga
tRNA gene sequence
AGCGGGGTGGGGTAGTCAGGAAATCCCGATGGGCTCATAACCCGTAGATCGATGGTTCAA
ATCCATCCCCCGCTActt
Downstream region at tRNA end position
cttctttatg
Secondary structure (Cloverleaf model)
>At1992	Met	CAT
                   a      Actt cttctttatg
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T A C C     A
    C T G A        G      | | | | |     A
  A         T G G G       G A T G G     C
  G           | | |                 T T
  G         T C C C
    A A A          G     AGATC
                    A - T
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(initiator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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