The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2235
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 527572
End posion on genome 527496
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggggagacct
tRNA gene sequence 
AGCGGGGTAGGGCAGCCTGGTAGCCCGCGGGGCTCATAACCCCGAGGTCGGTGGTTCAAA
TCCACCCCCCGCTACCA
Downstream region at tRNA end position 
cgcggggccc
Secondary structure (Cloverleaf model)
>At2235	Met	CAT
                   t      ACCA cgcggggccc
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C C A C C     A
      C G A        A      | | | | |     A
    C       C G G G       G G T G G     C
    T       | | | |                 T T
    G       G C C C
      G T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK