The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0284
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 184299
End posion on genome 184410
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agttagaact
tRNA gene sequence 
GCGGCGGTAGCTCAGCCTGGTTGGAGCGCCCGGCTCATACCCGGGAGGACCCGGGTTCAA
ATCCCGGCCGCCGCAtgc
Downstream region at tRNA end position 
tcccgtttta
Secondary structure (Cloverleaf model)
>At0284	Met	CAT
                   t      Atgc tcccgtttta
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T G          G     AGGAC
                    C - G
                    C - G
                   *C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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