The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0477
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 466224
End posion on genome 466315
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
tcttataaga
tRNA gene sequence
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGACTCATAATCCGGTTGTCCGGGGTTCAA
ATCCCCGCGGCGGCAcct
Downstream region at tRNA end position
taactaaatt
Secondary structure (Cloverleaf model)
>At0477	Met	CAT
                   a      Acct taactaaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(elongator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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