The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0554
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1355777
End posion on genome 1355691
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
ttttattgtc
tRNA gene sequence
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGACTCATAATCCGGTTGTCCGGGGTTCAA
ATCCCCGCGGCGGCActt
Downstream region at tRNA end position
acgtaattct
Secondary structure (Cloverleaf model)
>At0554	Met	CAT
                   c      Actt acgtaattct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(elongator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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