The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0609
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 424890
End posion on genome 424963
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atggcattga
tRNA gene sequence 
GCCGAGGTAGCCTAGCTGGTTGGGGCGCCTGACTCATAATCAGGAGGTCGGGGGTTCGAA
TCCCCCCCTCGGCAtgg
Downstream region at tRNA end position 
ttgaaaaggt
Secondary structure (Cloverleaf model)
>At0609	Met	CAT
                   a      Atgg ttgaaaaggt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    T       T C C G       G G G G G     C
    G       + | | |                 T T
    G       G G G C
      T T G        G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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