The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0831
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1218666
End posion on genome 1218509
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
ggcaagacga
tRNA gene sequence
GCCCGGGTGGCTTAGCTGGTCATAGCGCCGCACTCATAATGCGGAGATCGAGGGTTCAAA
ACCCTCCCCGGGCActc
Downstream region at tRNA end position
ctgcgataca
Secondary structure (Cloverleaf model)
>At0831	Met	CAT
                   a      Actc ctgcgataca
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          A A
                    T     C T C C C     A
      C G A        G      | | | | |     A
    T       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      T C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(elongator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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