The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0947
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 97537
End posion on genome 97426
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gatgttgcgt
tRNA gene sequence 
GCCGAGGTGGCTTAGCTGGTTATAGCGCCCGGCTCATAACCGGGAGGTCGAGGGTTCGAA
TCCCTCCCTCGGCACCA
Downstream region at tRNA end position 
tttttattcc
Secondary structure (Cloverleaf model)
>At0947	Met	CAT
                   t      ACCA tttttattcc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    T       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK