The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1023
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1325877
End posion on genome 1325992
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aattggaatt
tRNA gene sequence 
GCCGAGGTGGCTTAGGCTGGTTATAGCGCTCGGCTCATAACCGAGAGGCCGGGGGTTCGA
GTCCCCCCCTCGGCAttt
Downstream region at tRNA end position 
ttttataata
Secondary structure (Cloverleaf model)
>At1023	Met	CAT
                   t      Attt ttttataata
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     C C C C C     A
    C G G A        G      | | | | |     G
  T         T T C G       G G G G G     C
  G           | | |                 T T
  G         T A G C
    T T A          G     AGGCC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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