The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1061
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 18518
End posion on genome 18404
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
gaagcacatt
tRNA gene sequence
GCCGAGGTGGCTTAGGCTGGTTATAGCGCTCGGCTCATAACCGAGAGGTCGGGGGTTCAA
GTCCCCCCCTCGGCAttt
Downstream region at tRNA end position
ttctttttgg
Secondary structure (Cloverleaf model)
>At1061	Met	CAT
                   t      Attt ttctttttgg
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     C C C C C     A
    C G G A        G      | | | | |     A
  T         T T C G       G G G G G     C
  G           | | |                 T T
  G         T A G C
    T T A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(elongator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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