The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1160
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 891114
End posion on genome 891228
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
aacaagcatt
tRNA gene sequence
GCCGAGGTGGCTTAGGCTGGTTATAGCGCTCGGCTCATAACCGAGAGGTCGGGGGTTCAA
GTCCCCCCCTCGGCAttt
Downstream region at tRNA end position
tcttttttga
Secondary structure (Cloverleaf model)
>At1160	Met	CAT
                   t      Attt tcttttttga
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     C C C C C     A
    C G G A        G      | | | | |     A
  T         T T C G       G G G G G     C
  G           | | |                 T T
  G         T A G C
    T T A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(elongator).
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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