The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1195
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 255945
End posion on genome 256018
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atgcatattt
tRNA gene sequence 
GCTGCGGTGGCCTAGCTGGTTAGGGCGCGGGACTCATAATCCCGAGGTCGGGGGTTCGGA
TCCCTCTCGCAGCActg
Downstream region at tRNA end position 
tttttttttg
Secondary structure (Cloverleaf model)
>At1195	Met	CAT
                   t      Actg tttttttttg
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     G - C
                     G + T          T A
                    T     C T C C C     G
      C G A        G      | + | | |     G
    T       T C C G       G G G G G     C
    G       + | | |                 T T
    G       G G G C
      T T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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