The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1285
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1650317
End posion on genome 1650208
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cactttgtgc
tRNA gene sequence 
GCTGCGGTGGCCTAGTCGGTTAGGGCGCCAGACTCATAATCTGGAAATCGTGGGTTCGGA
TCCCACCCGCAGCAtcc
Downstream region at tRNA end position 
ttacagttgg
Secondary structure (Cloverleaf model)
>At1285	Met	CAT
                   c      Atcc ttacagttgg
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C A C C C     G
      T G A        G      | | | | |     G
    C       T C C G       G T G G G     C
    G       + | | |                 T T
    G       G G G C
      T T A        G     AAATC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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