The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1315
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 382165
End posion on genome 382053
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cgcgggcgta
tRNA gene sequence 
GCCGGGGCAGCTTAGCCTGGTAGAGCGCGGGGCTCATAACCCCGAGGTCCCGGGTTCAAA
TCCCGGCCCCGGCACCA
Downstream region at tRNA end position 
agccaggaac
Secondary structure (Cloverleaf model)
>At1315	Met	CAT
                   a      ACCA agccaggaac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       T T C G       C C G G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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