The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1445
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 2159252
End posion on genome 2159362
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgtgttgcaa
tRNA gene sequence 
GCCCGGATAGCCTAGATGGTTGGGGCGCCAGACTCATAATCTGGAGGTCGCGTGTTCGAG
TCACGCTCCGGGCActt
Downstream region at tRNA end position 
tatttttatt
Secondary structure (Cloverleaf model)
>At1445	Met	CAT
                   a      Actt tatttttatt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T G
                    T     C G C A C     A
      A G A        A      | | | | |     G
    T       T C C G       G C G T G     C
    G       + | | |                 T T
    G       G G G C
      T T G        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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