The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1621
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 3487256
End posion on genome 3487345
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgcactttgt
tRNA gene sequence 
GCTGTTGTGGCCTAGCTGGTTAGGGCGCCAGACTCATAATCTGGAGGTCGCGGGTTCGGA
TCCCGTCAACAGCAtta
Downstream region at tRNA end position 
gaacaactag
Secondary structure (Cloverleaf model)
>At1621	Met	CAT
                   t      Atta gaacaactag
                     G - C
                     C - G
                     T - A
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     T G C C C     G
      C G A        G      + | | | |     G
    T       T C C G       G C G G G     C
    G       + | | |                 T T
    G       G G G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
Comment


---


Input Comment 




E-mail


Comment


 Input this 5 letters





Attention:
When your comment is judged as an irrelevant one by the administrator, 
your comment will be deleted by the administrator. 







 BACK