The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1748
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1527895
End posion on genome 1527982
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aacaaaaaat
tRNA gene sequence 
GCCGGGATGGCTTAGTTGGAAGAGCGCCGGACTCATAATCCGGAGGTCTCGGGTTCAATC
CCCGATCCCGGCAtcc
Downstream region at tRNA end position 
attattgtat
Secondary structure (Cloverleaf model)
>At1748	Met	CAT
                   t      Atcc attattgtat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          C T
                    T     A G C C C     A
      T G A        G      | | | | |     A
    T       T T C G       T C G G G     C
    G       + | | |                 T T
    G       G A G C
      A A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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