The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1809
Genome IDAL096836
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus abyssi [AL096836]
Start position on genome 644753
End posion on genome 644645
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tccgggcagt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAAAGCGCCCGGCTCATAACCGGGAGATCCGGGGTTCGA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
tcctattcta
Secondary structure (Cloverleaf model)
>At1809	Met	CAT
                   t      ACCA tcctattcta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         T T C G       C G G G G     C
  G         | | | |                 T T
  G         A A G C
    T C A          G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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