The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1857
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1298035
End posion on genome 1297926
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctcgggtagt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAAAGCGCCCGGCTCATAACCGGGAGATCCGGGGTTCGA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
ctattcttat
Secondary structure (Cloverleaf model)
>At1857	Met	CAT
                   t      ACCA ctattcttat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         T T C G       C G G G G     C
  G         | | | |                 T T
  G         A A G C
    T C A          G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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