The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1886
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1319923
End posion on genome 1320031
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tccaggcagt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAAAGCGCCCGGCTCATAACCGGGAGATCCGGGGTTCGA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
tactattcta
Secondary structure (Cloverleaf model)
>At1886	Met	CAT
                   t      ACCA tactattcta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         T T C G       C G G G G     C
  G         | | | |                 T T
  G         A A G C
    T C A          G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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