The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1946
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 686204
End posion on genome 686097
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctcgggaagt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAGAGCGCTCGGCTCATAACCGAGAGGTCCGGGGTTCAA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
ttcagccctt
Secondary structure (Cloverleaf model)
>At1946	Met	CAT
                   t      ACCA ttcagccctt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       C G G G G     C
  G         + | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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