The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2050
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1311796
End posion on genome 1311710
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaataaagat
tRNA gene sequence 
GCCGGGGTGGCTTAGCTGGAGGAGCGCCGGACTCATAATCCGGAGGTCTCGGGTTCGATC
CCCGATCCCGGCAtat
Downstream region at tRNA end position 
aaactgatga
Secondary structure (Cloverleaf model)
>At2050	Met	CAT
                   t      Atat aaactgatga
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          C T
                    T     A G C C C     A
      C G A        G      | | | | |     G
    T       T T C G       T C G G G     C
    G       + | | |                 T T
    G       G A G C
      A G          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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