The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2234
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 868263
End posion on genome 868154
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tctccggaga
tRNA gene sequence 
GCCGCCGTAGCTCAGCCGGGCAGAGCGCCGGGCCCATAACCCGGTGGCCCGGGGTTCAAA
TCCCCGCGGCGGCACCA
Downstream region at tRNA end position 
cccaaacctc
Secondary structure (Cloverleaf model)
>At2234	Met	CAT
                   a      ACCA cccaaacctc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    G       | | | |                 T T
    G       G A G C
      G C A        G     TGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  C       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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