The detailed information of tRNA gene sequence


Sequence ID>WENV170971614
Genome IDMTKX01008415
Search identical group
Phylum/Class[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 1008
End posion on genome 1105
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
ggcgccccac
tRNA gene sequence 
GGAGGCGAATCGGGACTGGTGTTCTGCGCGGTCTTCAAAACCGTTGAGGGGCGTTGAGAG
ACGTCCCTGGTGGGTTCGATTCCCATGCGCCTCCGCCA
Downstream region at tRNA end position 
ctttttccat
Secondary structure (Cloverleaf model)
>WENV170971614	SeC(p)	TCA
                   c      GCCA ctttttccat
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C
                     A   G          T T
                    A     T A C C C     A
      T C A        T      + | | | |     G
    G       G G G C       G T G G G     C
    G       + | + |                 T T
    T       T C T G
      G T          C     TGAGGGGCGTTGAGAGACGTCCCTG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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