The detailed information of tRNA gene sequence


Sequence ID>WENV170972213
Genome IDMTKX01023133
Search identical group
Phylum/Class[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 845
End posion on genome 942
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
tttcccctgg
tRNA gene sequence 
GGAAGTGCCAAGGTCACTGGTGGGCCTCCTGGACTTCAAATCCAGTGTGGGGCGCTAGAA
CCGTCCCGGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
aatttttttt
Secondary structure (Cloverleaf model)
>WENV170972213	SeC(p)	TCA
                   g      GCCA aatttttttt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    C     T A C C C     A
      C A C        A      + | | | |     G
    T       T G G A       G T G G G     C
    G       + | | |                 T T
    G       G C C T
      T G G        C     TGTGGGGCGCTAGAACCGTCCCGG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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