The detailed information of tRNA gene sequence


Sequence ID>WENV170972761
Genome IDMTKX01049483
Search identical group
Phylum/Class[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 589
End posion on genome 686
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
acttctcggc
tRNA gene sequence 
GGAGCGGCTCCCGGTCCGGTGACCGGCGCGGTCTTCAAAACCGTCTGCGGGGCGGTGCTC
CCGTCCTGGGTGGGTTCGACTCCCATGTCGCTCCGCCA
Downstream region at tRNA end position 
agctgatcac
Secondary structure (Cloverleaf model)
>WENV170972761	SeC(p)	TCA
                   c      GCCA agctgatcac
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G          T C
                    T     T A C C C     A
      C C T        C      + | | | |     G
    G       G G C C       G T G G G     C
    G       | | | |                 T T
    T       C C G G
      G A          C     CTGCGGGGCGGTGCTCCCGTCCTGG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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