The detailed information of tRNA gene sequence


Sequence ID>WENV170976757
Genome IDMTKZ01011760
Search identical group
Phylum/Class[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 180
End posion on genome 278
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aattacccgt
tRNA gene sequence 
GGGAGTGGTTGTGTCCCGGTGGATGCTGCGGTCTTCAAAACCGTCGGCCGGTCGCGCTGA
GCGAGCGGCGGTGGGTTCGACTCCCATCCACTCCCGCCA
Downstream region at tRNA end position 
ttcatccctc
Secondary structure (Cloverleaf model)
>WENV170976757	SeC(p)	TCA
                   t      GCCA ttcatccctc
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C
                     G - C          T C
                    T     T A C C C     A
      C C C        T      + | | | |     G
    G       T G T G       G T G G G     C
    G       | + + |                 T T
    T       A T G C
      G G          T     CGGCCGGTCGCGCTGAGCGAGCGGCG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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