The detailed information of tRNA gene sequence


Sequence ID>WENV170978478
Genome IDMTKZ01051545
Search identical group
Phylum/Class[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 1557
End posion on genome 1460
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
cccgtggcga
tRNA gene sequence 
GGAGCGGCTTCCGGTCCGGTGACCGGCGCGGTCTTCAAAACCGTCTGCGGGGCGGTGATC
CCGTCCCGGGTGGGTTCGACTCCCATGTCGCTCCGCCA
Downstream region at tRNA end position 
agctcgcttg
Secondary structure (Cloverleaf model)
>WENV170978478	SeC(p)	TCA
                   a      GCCA agctcgcttg
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G          T C
                    T     T A C C C     A
      C C T        T      + | | | |     G
    G       G G C C       G T G G G     C
    G       | | | |                 T T
    T       C C G G
      G A          C     CTGCGGGGCGGTGATCCCGTCCCGG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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