The detailed information of tRNA gene sequence


Sequence ID>WENV170979228
Genome IDMTKZ01081264
Search identical group
Phylum/Class[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 2052
End posion on genome 1956
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
ggtgctaggc
tRNA gene sequence 
GGAAGCGGACGGGTCCTGGTGGGTCCCCCGGACTTCAAATCCGGTGTCGGGCGCGACGAG
CGTCTGGGGAGGGTTCGATTCCCTTGCGCTTCCGCCA
Downstream region at tRNA end position 
tgtagagata
Secondary structure (Cloverleaf model)
>WENV170979228	SeC(p)	TCA
                   c      GCCA tgtagagata
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     G   G          T T
                    A     T T C C C     A
      T C C        C      + | | | |     G
    G       T G G G       G A G G G     C
    G       + + | |                 T T
    T       G T C C
      G G          C     TGTCGGGCGCGACGAGCGTCTGGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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