The detailed information of tRNA gene sequence


Sequence ID>WENV170980059
Genome IDMTKZ01123200
Search identical group
Phylum/Class[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
Species
Start position on genome 2366
End posion on genome 2271
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
atgataacgc
tRNA gene sequence 
GGAGGTGACTGGTGCCTGGTGGTGCTCCTGGTCTTCAAAGCCAGTGTGGGGCTCGCAAGG
GTCCCGGGTGGGTTCGATTCCCATTCACCTCCGCCA
Downstream region at tRNA end position 
tttttgatct
Secondary structure (Cloverleaf model)
>WENV170980059	SeC	TCA
                   c      GCCA tttttgatct
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T          T T
                    C     T A C C C     A
      T C C        T      + | | | |     G
    G       G T G G       G T G G G     C
    G       + + | +                 T T
    T       T G C T
      G G          C     TGTGGGGCTCGCAAGGGTCCCGG
                    C - G
                    T - A
                    G - C
                    G - C
                    T + G
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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