The detailed information of tRNA gene sequence


Sequence ID>CL171000010
Genome IDAP014633
Search identical group
Phylum/ClassGammaproteobacteria
SpeciesThioploca ingrica [AP014633]
Start position on genome 2364985
End posion on genome 2364657
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tattttacag
tRNA gene sequence 
GCGCCCGTAGCTCATCCGGATAGAGCATCGGCCTTCTAAGCCGAGGGTAGCAGGTTCGAG
TCCTGTCGGGCGCGgag
Downstream region at tRNA end position 
tattttagtg
Secondary structure (Cloverleaf model)
>CL171000010	Arg	TCT
                   g      Ggag tattttagtg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     T G T C C     A
      C T A        A      + | | | |     G
    C       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        A     GGGTA
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=255 (in A-loop)
AAGCATAATTGGACCCATAATAGAAAACAAGAACTGTTATGGTGGATGGTGCTGTATCGGTGAACCCTGT
AAAATGGCAACACCGAGGAAACCGAATGAGTAGTAAAGGGGTAAATTCAGTTTATCGGTAACTACTCTAA
GGCATAACGTCTAGGGTTCCGTAGAGGCCATATGCACCATGCCTGAGAAGGCAAAGATATGGTCCAGACC
ACAAACAAGACCACCAGCTTGGTAGTGAAAACTATAGTGGTATGA
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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