The detailed information of tRNA gene sequence


Sequence ID>CL170100173
Genome IDCP012746
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesParaburkholderia caribensis MBA4 [CP012746, CP012747]
Start position on genome 3092198
End posion on genome 3091827
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cgtccgccct
tRNA gene sequence 
GCCGGGGTGATGAAATTGGTAAACATAGCGGACTTAAAATCCGCCGCTTAACAGCTTGCC
GGTTCGAGTCCGGTCCCCGGCACCA
Downstream region at tRNA end position 
ggacacctcc
Secondary structure (Cloverleaf model)
>CL170100173	Leu	TAA
                   t      ACCA ggacacctcc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     T G G C C     A
      T A A        G      + | | | |     G
    T       A G T A       G C C G G     C
    G         | | |                 T T
    G       A C A T
      T A A        A     CGCTTAACAGCTT
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=287 (in A-loop)
AAAGCATTGAGTGCCCAGCCGGAAACGGCCGGTGCAGAACCCTTCAAATTCGGCGAAACCCCTGAGTGCA
CGCGATCCACACTCGTGCGACGAGGCAACGCCGAGCCAAGCCCGTTTTCTTTCCCGCCGATGCGGGACGG
AAGGCGCGGAAGGTGTAGAGACTAGACGGGGGGCGCCTTAGGCGATGGGCGTGCAAGACGCGCATCGCGA
TGGCGAAGGCATAGTCCAGCGCACGAACGTTTGCTTTTCTGGTCGAAGCAGACGGCGTCGAAAGACGTAG
TGTGACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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