The detailed information of tRNA gene sequence


Sequence ID>CHL091900024
Genome IDAY522329
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Indica Group
Start position on genome 121997
End posion on genome 120979
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcgcgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL091900024	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=947 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGAAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTTGAATCGGAGTTTGAA
ACCAAACAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCCATGTAGATCTAACTTTC
TATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGGCACTACGGCTCCTCTCTTCTCGAGAATCCATACAT
CCCTTATCAGTGTATGGAGAGCTATCTCTCGAGCACAGGTTGAGGTTCGTCCTCAATGGGAAAATGGAGC
ACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCTTTCATTCTGGGGTGACGGAGGGATC
GTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGCGGTCTGGAGAAAGCAGCAATCAATAGGACTTCCC
TAATCCTCCCTTCCTGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGGTTGGATC
TAGCCATAAGAGGAATGCTTGGTATAAATAAGCCACTTCTTGGTCTTCGACTCCCTAAGTCACTACGAGC
GCCCTCGATCAGTGCAATGGGATGTGGCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGAGCAGGTT
TGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCCTTTTTCTGCCCAT
CGGAGTTATTTCCCAAGGACTTGCCATGGTAAGGGGGAGAAGGGGAAGAAGCACACTTGAAGAGCGCAGT
ACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAGTCTATTGATTCTCTC
CCAATTGGTTGGATCGTAGGGGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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