The detailed information of tRNA gene sequence


Sequence ID>CHL091900040
Genome IDAY660566
Search identical group
Phylum/ClassViridiplantae
SpeciesHuperzia lucidula
Start position on genome 149644
End posion on genome 148617
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
acgggccgcc
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATAGCCCAgct
Downstream region at tRNA end position 
gcaccgaggc
Secondary structure (Cloverleaf model)
>CHL091900040	Ile	GAT
                   c      Agct gcaccgaggc
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=956 (in A-loop)
ATTGCGTCGTTGTGCTTGGGCTGTGAAGGCTCCCAGCCACACGGATAGTTTGATGTGCCCATTAGCGCCT
AACCCGAAGATGTGGGTCATACAAGGCACGTTAGCATGGCGTACTCCTCTTGTTTCACTAGGTTTTGAAA
CCAAACTAGGTTTTGAAACCGAAGAGGATAGATGGGGCAATTTAGGTGAAATCCAATAGGGATTTAACTT
TCCATTCACTCGTGGGATCTGGGCGGTCCAGGGGGGGACCAGCCATGAATGGCTCCTTTCTTCTCGACAA
TCTATACATCCCTTATCAGTGTATGGATGGCTATCCACCGAGCACAGGCCGAAGTTGTTCAGCCTAAATA
TGGAAAATGGAGCACCTAATAACGCATTTTTCACAGACCAAGAACTACGAGATCACCCACGGAAGTGTTT
CATTCTAGGGTGACGGAGGGATCATACCATTCGAGCCTTTTTCTGCTTTTCCTGGAGGTCCGGAGAAAGC
AGCAATCAATATCATTTGTCCGGAGGGAACCCGAAGGGGGGAGGGAAGCCAAAAACATAAGAACTGTCCG
GAGGGCCTAGGACACTGGATCTAGTCAAAGGAATGCTCGGTGCAAATAACTCCTCCTTGCTTGGTCTCCG
ACCCTATTAATCACCACGAAAAGGTCTCCGGATCAGTGTAATAATGGGATGTCCTTATCTACTTCCCAAC
GGTGGGGGCAGGTTCGAAAAAGGATCTTAGAGTGTCCAAGGTTGGGGTCTAGTAACGCCTTCTTCTCTCC
TTTTCTCAAAGTTATGTCTCAAAAACTTGCTGTTGGCAAGGAAAAGGGAAGGGGTAACAAGCACACTTGG
AGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATTGCTCCTAAAAAAATCTATTG
ATTGTATTACAATTGGATAGTACTGTAGGTGCAACGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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