The detailed information of tRNA gene sequence


Sequence ID>CHL091900207
Genome IDDQ231562
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum tuberosum
Start position on genome 17124
End posion on genome 15738
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gaaagagaac
tRNA gene sequence 
GTTGTTTTGGGGGGGGTGATACCCGTTGGTACCGGATTAGAGATGGTTGAATCAAAAAAT
TTTGTTTAAAGTTCGATTTTTTCAGAGGGCAagg
Downstream region at tRNA end position 
caatatgaat
Secondary structure (Cloverleaf model)
>CHL091900207	Ile	GAT
                   c      Aagg caatatgaat
                     G - C
                     T + G
                     T + G
                     G   G
                     T - A
                     T + G
                     T - A          T T
                    T     C T T T T     A
      G G G        G        | | | +     G
    T       G G G G       T A A A G     C
    G       | |   +                 T T
    A       C C G T
      T A C        T     GGTTGAATCAAAAAATTTTGTT
                    G + T
                    G   A
                    T + G
                    A   A
                    C - G
                  C       A
                  G       T *
                    G A T
intron: position=38, length=1296 (in A-loop)
CAAGGGATTAGTGCACCCTTCAAAACAACATAACAACATTCCTTTGGAAACAAAAAAAACGAATCTATTC
GAGGGGGAGATGAGAGATATTTTGTTCCACCACAGAAAATTATTTGATTCTTGTCTTTCAAAAAAATTCC
ACGACATACCCGAACAATCATTTATAGGATTTAATGATTCCTAACAACGGATTCATCTCTTTCGCTATCT
GCATTTGGTATGGTTATTTGCTTTGGTAATAAAAAGAATAATGAATAGAAAAGAATAATGGTTTGGGTCG
TGTATCTACGTCCAATCTACAGTAGAAGAGAAGGTTCCATCGGAACAATTATTTATTTCAGTTCAGGGTT
CCTCGTCTTTTTTTTTTTTTGAAAAAGAATAAAAAAAAGGGGGGAGGTTGTGGGGAGAAATGACAAGAAG
ATATTGGAACATAAATTTGGAAGAGATGATGGAGGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGG
AATCCTAAAATGGCGCCTTATATCTCTGCAAAGCGTAAGGGTATTCATATTACAAATCTTACTAGAACTG
CTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGACGCAGCAAGTAGGGGAAAACAATTCTTAATTGT
TGGTACCAAAAATAAAGCAGCTGATTCAGTAGAGTGGGCTGCAATAAGGGCCCGGTGTCATTATGTTAAT
AAAAAATGGCTTGGCGGTATGTTAACGAATTGGTCCACTACAGAAACAAGACTTCATAAGTTCAGGGACT
TGAGAATGGAACAAAAAACAGGGAGACTCAACCGTCTCCCGAAAAGAGATGCAGCTATGTTGAAAAGACA
ATTATCTCGCTTGCAAACATATCTGGGCGGGATTAAATATATGACAGGGGTACCCGATATTGTAATCATC
GTTGATCAGCACGAAGAATATACGGCCCTGCGAGAGTGTATTACTTTAGGAATTCCAACAATTTGTTTAA
CCGATACAAATTGTGACCCCGATCTCGCAGATATTTCAATTCCAGCGAATGATGACGCCATATCCTCAAT
CCGATTAATTCTTAACAAATTAGTATTCGCAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGA
TTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCCCTAGAAATCCCTTATGGAATCGCTTAC
TATTTCTGAATTTCAAAAAATAGATCAAAATAACTGGGGATATTATGTGATTTATTAGTATTATAAATCT
TAGTTGGTATTCAAAATATCCGATTCAAGTAGACAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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