The detailed information of tRNA gene sequence


Sequence ID>CHL091900301
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 120038
End posion on genome 119179
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcacgaT
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATAGCCCAGCa
Downstream region at tRNA end position 
gcgccaaggg
Secondary structure (Cloverleaf model)
>CHL091900301	Ile	GAT
                   T      AGCa gcgccaaggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=785 (in A-loop)
ATTGCGTCGTTGTGCTTGGGCTGTGAAGGCTTTCAGCCACATAGATAGTTCGTTCAATGTGCTCATTAAC
GCCTGACCCGAAGATGTTGATCATCTAAGGCACCTTAGCATGGCGTACTCCTCCTGTTTCAACTAGGCCT
TGAAACTTAAAAATTTTTAGGAGGATGAATGAGGCGATTCAGGTGAGATTTAACAAGAATTCAACTTGCC
ATTCACTAGTGGGATCTGGGCGGTCCAAGAGGGAGTTTAGTTATTCGAAATTCCTTTCTTCTCGAAAATT
CATATATTCCTTATCAGTATATGGATAACTATCTTTTGAGCACAGGTTGAAATTCAACCTATAAGTGAAA
AATGAAGCACCTAAATAACGCATCTTCACAGACCAAGAACTACGAGATCACCTTTTTTTCATTCTAGGGT
GACGGAGGGATCATACCATTCGAGCCTTTTTCTGCTTTTTTGGAGGTCCAAAAACAGCAACAATTAATAT
TATTTATCCGTGGAATGTTCTTATCTATTTCCTAACAATTAATTTGGTTCGAAAAAGGATCTTAGAGTGT
TCAGGGTTGATCTAAGAAGATAATATTGTAACGCCTTCTTTTCTCTTCCCATTGAAGTTTTCTCTTCTTA
CCATTATTAATAAAAAAGAAGAAGAGGGAATAAGCACACTTGGAGAGCGCAGTACAACAAAGAGTTGTAT
GCTGCGTTCGGGAAGAATGAATCGCTCCTAAAAAAAAGAATTTATTTATTTTCGGATAATTAATATGGTG
CGAGAATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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