The detailed information of tRNA gene sequence


Sequence ID>CHL091900315
Genome IDAF494278
Search identical group
Phylum/ClassViridiplantae
SpeciesChaetosphaeridium globosum
Start position on genome 93771
End posion on genome 94506
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ccctagaaaa
tRNA gene sequence 
GGGGGTATAGCTCAGTTGGTAGGAGCGCCGCCCTTGCAAGGCGGATGTCAGCGGTTCGAG
TCCGCTTACCTCCAggg
Downstream region at tRNA end position 
gatttcaaaa
Secondary structure (Cloverleaf model)
>CHL091900315	Ala	TGC
                   a      Aggg gatttcaaaa
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A G        G     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=663 (in A-loop)
TTGGGTCGTTGCGTTTACGGGTTGGATGTCTAGATTACTAGATGGTAATGATAGTAGTTCTTACCTAAAC
CCGTGGCTAACTCTTATACAATATATATATTGTATAGGAGGACTGTAACATGCCACTATTCCTCTAAAAT
GAAACACAGATGGGAATGTTTTGGTAGAGAAGGTAGGGTGGGATATCGGTTAGATCTTATATTGATCGTA
CATGGTTAATAGCCAGAGTTGGCGGCTCTCCTTGGGTTATCCCATCTAGATTCCCTGGGAAAGAGGATCA
AGCTATGCCTTGCAAATGGCTTAATAAACTATCCCTCTTTGGCGCGATTCTTAACAATATCGTAATATTT
CAAAAGAAACCTGAGCCGAACCCACCGATTCCATCCCGTAGGAACTTCGAGCTGGCCTGCAGGCTCTTGA
TAGCCAAAAGCCACAGACCGACCATAATCGCCTGTTTTCTTTTTTTAGAAAAGGATAGGGTCGGAGAAGA
GTCAGAATGTATAATTCAATAATATGACTCTTTGGAGAGCACAGTACGATGAAAGTTGTATGCTGTGTTC
GGAGGGAAGCTCTTGTCTTCTGTTAGTTAATAAAATACAATCAGATTAATAAATGAATAATTTTTATTAA
AAATTTGTTCATTTAAGTCAGAGCTTACCCTAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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