The detailed information of tRNA gene sequence


Sequence ID>CHL1861000059
Genome IDDQ231548
Search identical group
Phylum/ClassViridiplantae
SpeciesBrassica rapa subsp. pekinensis (DQ231548)
Start position on genome 46249
End posion on genome 46646
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aagcaaaaag
tRNA gene sequence 
GGGGATATGGCGGAATTGGTAGACGCTACGGACTTAATATCCGTTGACTTTTAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAacc
Downstream region at tRNA end position 
ctactcccta
Secondary structure (Cloverleaf model)
>CHL1861000059	Leu	TAA
                   g      Aacc ctactcccta
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     TGACTTTTAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T A A
intron: position=38, length=313 (in A-loop)
TGGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAACA
ATGGGCAATCCTGAGCCAAATCCTGGGTTACGCGAACAAACCAGAGTTTAGAAAGCGGGATAGGTGCAGA
GACTCAATGGAAGCTGTTCTAACAAATGGAGTTCAATCCCTTGTGTTGAATCAAACGATTCACTTCATAG
TCTGATAGATCCTTGGTGGAACTTATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAAT
ACTGACAACAATGAAATTTATAGTAAGATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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