The detailed information of tRNA gene sequence


Sequence ID>CHL1861000281
Genome IDHQ234669
Search identical group
Phylum/ClassViridiplantae
SpeciesJacobaea vulgaris (HQ234669)
Start position on genome 46547
End posion on genome 47053
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tctcaaaaag
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAATATCCGTCGATTTCAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAaaa
Downstream region at tRNA end position 
agaccacttg
Secondary structure (Cloverleaf model)
>CHL1861000281	Leu	TAA
                   g      Aaaa agaccacttg
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGATTTCAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T A A
intron: position=38, length=422 (in A-loop)
TGAATTGAGCCTTGGTATGGAAACTTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAATA
AAAATGGGTAATCCTGAGCCAAATCACGTTTTCCGAAAACAAACAAAGGTTCAGAAAGCGAAAAGAAAAA
AGGATAGGTGCAGAGACTCGATGGAAGTTGTTCTAACGAATGGAGTTGATTGTCTTACATTGGTAGAGGA
ATCCTTCTATCTTCAGAAAAGATGAAGGATAAACCTGTAGACATAATACAGAAGAATTGGTATAAATCGA
TTCTGAGAATCGAATATCCATTGATCAAACCATTCACTCCATAATCTGATAGATCTTTTGAAGAACTGTT
GGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATACCGGCAACAATGAAATTTATAGTAAGAGGA
AA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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