The detailed information of tRNA gene sequence


Sequence ID>CHL1861002079
Genome IDKT626943
Search identical group
Phylum/ClassViridiplantae
SpeciesIris sanguinea (KT626943)
Start position on genome 46767
End posion on genome 47245
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
taaaataaaa
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTGATATCCGTCGACTTTAGAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAata
Downstream region at tRNA end position 
aaaagtccat
Secondary structure (Cloverleaf model)
>CHL1861002079	Ser	TGA
                   a      Aata aaaagtccat
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAGAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T G A
intron: position=38, length=394 (in A-loop)
TGAATTGAGCTTTAGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAAAAAAAG
GGGGGCAATCCTGAGCCAAATCTTTATTTTGAGAAAACGAACAGGGGGTTAAAAACTAGAATAAAAAAGG
ATAGGTGCAGAGACTCGATGGAAGCTGTTCTAGTCAAACGATTAATCACGACCTGAATCCATTATATATG
CAAAATTCAGAGCTATTGTGGATCTATTCCAATCGAAGTTGAAGGAAGAATCGATCAGTGATCAAATCAT
TCATTCCAGAGTTTGATAGATCTTTTGAAAAACGAATTAATCAGAAGAGAATAAAGAGAGAGTCCCATTC
TACATGTCAATACCGACAACAATGAAATTTATAGTAAAAGGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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